Scaffold Ga0209221_1000022

Overview

Basic Information

• Taxon OID: 3300027609
• Scaffold ID: Ga0209221_1000022
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 94075
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000677	Metagenome / Metatranscriptome	940	Y
F001303	Metagenome / Metatranscriptome	727	Y
F062504	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209221_100002221	F062504	AGTAGG	MYSISKGRPEDIILTCRDCSHIESVSQFNPSLGSQRTQAAKAMQAHSRDKHQVSPAELMLPKTYEVLASAAVSRHAWTRPR
Ga0209221_100002253	F001303	GGA	MDRENRESMDEIHLRILRVTDDLRVIQRELNCAAMQAPNDPELMEALADQPEMESVQGLKSALDQMRHFLWFYMQVVTSDSEMGEKFRQTLRQEVPARAPELEQQFQSATDAIMLRYLADSKFRKPN
Ga0209221_100002267	F000677	N/A	MKFLLSILLLSVAVQAQMFPVSSFALPDAPAPQHPFWSSENKVDASMLAGLVAADAITTQRGLNEGFREANPVMRPFVTRGAPGEAVGSALGFGAAIGVAYLMHRSHHYKAERITMRLMITGELGFVANNIVAIR