Scaffold Ga0208974_1050106

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1050106
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1202
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001781	Metagenome / Metatranscriptome	635	Y
F062746	Metagenome / Metatranscriptome	130	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10501061	F062746	N/A	MINAIHDSKLFYLRTPSDLMDKEPLKKDLEDAVSFMQGLLAEGYFDND
Ga0208974_10501063	F084239	GGAG	MTRSSRFMEYLKIHLISLEQDLEQIDYVNEHHLYRVKQAEIENTRHILSVATDIMNETKESYAD
Ga0208974_10501065	F001781	GGAG	MKTEDKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYRQNCTIDEMWDHLCEAVEAGHGFSLEYGAEQHNDDVLEWMLNRDYIVDSMFEEEEEDEDATD
Ga0208974_10501066	F000441	AGGAGG	MQQTDKYINEQLSKAQALLWSGSLHEQDEAHNIIAKLINDRMEKVEGQND