NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208974_1039757

Scaffold Ga0208974_1039757


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1039757 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1386
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004450Metagenome437Y
F019103Metagenome231Y
F066591Metagenome126Y
F088903Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10397571F088903N/AGNTMKATVTNAKLLGAQRSGWAGFKHRLMAQLGIPQNQFDKWDVPTDWQQAFCKANGRQLFKTSKATP
Ga0208974_10397572F019103AGGMSNHVSQTGYKPTKTDLKGLFNHRFETDGGLVLDCYLIYEVEERETRDEPGCAASMELVFALVEGVDISEVLGDLAETIEAEALSDLEDQIEDAALERGAA
Ga0208974_10397573F004450GAGGMNWVAAALVALVICTAYLLDGPSEHDARVDTKEELIQKLCGENAGWKLLADGSVQCFTHRGHKTKKVTL
Ga0208974_10397574F066591GGAGGMLALLRAARSCGLGIPWRMVVTMNDNDDYELANWMYAIATCILVLFAVTGIFGLAGYLWGML

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.