Scaffold Ga0208974_1039757

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1039757
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1386
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F019103	Metagenome	231	Y
F066591	Metagenome	126	Y
F088903	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10397571	F088903	N/A	GNTMKATVTNAKLLGAQRSGWAGFKHRLMAQLGIPQNQFDKWDVPTDWQQAFCKANGRQLFKTSKATP
Ga0208974_10397572	F019103	AGG	MSNHVSQTGYKPTKTDLKGLFNHRFETDGGLVLDCYLIYEVEERETRDEPGCAASMELVFALVEGVDISEVLGDLAETIEAEALSDLEDQIEDAALERGAA
Ga0208974_10397573	F004450	GAGG	MNWVAAALVALVICTAYLLDGPSEHDARVDTKEELIQKLCGENAGWKLLADGSVQCFTHRGHKTKKVTL
Ga0208974_10397574	F066591	GGAGG	MLALLRAARSCGLGIPWRMVVTMNDNDDYELANWMYAIATCILVLFAVTGIFGLAGYLWGML