Scaffold Ga0208974_1024809

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1024809
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1843
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F078699	Metagenome	116	Y
F098687	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10248093	F002398	N/A	MNRVIKKMIHLLSLFLILSADPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNILEKNKKDFFEYLDSIGIEHNKVGSYYFFFRKNK
Ga0208974_10248094	F002406	N/A	MENLKWIRAMSDRLRDELSKEYDDETKDLIIRAFMRGLYQDPAIVEELKSSSLIESDYFEDEQSN
Ga0208974_10248096	F078699	AGGA	MKIGFRVMGTLEVPDDITLHEDVLNQLYALEMNDKMYMLQMCLVAESPQGEYEMVHMVEEMEEHNFKNVRYSDAEFFELD
Ga0208974_10248097	F098687	N/A	LYPDTTFEMVSGSIENDTHYEFTCCDGNFEETCSYETFKEAVVDGKWGGWNEWAEMFQEDEV