Scaffold Ga0208974_1023402

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1023402
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1902
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011827	Metagenome	286	Y
F016246	Metagenome	248	Y
F025916	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10234022	F011827	N/A	MRNSTHSANTHLNYRSRWKVRDAISSKRHGETCDDIRLACHLWLLRRCPGYAEEHAEHVEQYARGIGRA
Ga0208974_10234024	F025916	GAG	MARIPEAVSTHLTRPLYACRLRDCGAPDCQPCAGSEAARLYREQQECDHEEHEHGHCLACGADITDTLAGQAEDATDAAQDR
Ga0208974_10234026	F016246	GGAGG	MTQPDFFPHLPRRLTHDEIIAGFAELLRAVEAMEFWEPWP