Scaffold Ga0208974_1022411

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1022411
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1949
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009960	Metagenome	310	Y
F038092	Metagenome	166	Y
F050949	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10224111	F009960	N/A	MLTLENIQKIDGYSLEVKGKGYYFKGWDNTTNDVATFALAGVSASNPLIRITLYKKGNMVFDDIQKKDCYVYGIWVDGLLFYYTKEKLNTPAEFRNTIEQILNGI
Ga0208974_10224112	F050949	AGG	MLTIKNRGRLISDSFYDKMGMYWVVDKIIDDPNEYIIVIENRKGPKAMFSLNKQNLYDVGYEFGILAGGLWTSKQRMYKVKTYIPIETISDKRLLIKRMNEMIDTSYDI
Ga0208974_10224115	F038092	N/A	MPQLPIPPPMTLAQRLQTIQQINGNIYNSPQQQAILDTQQIRDIAEAQAKATMIEMMKQETEKRKQTFLTIENIDKIKGHKYSEWLTVGGVMESDTHYEFTLLDEKHTQVETILLHRKQTSDKRYIMEYNNQTLWITKDRLSTIAGIIECMQEI