Scaffold Ga0208974_1020001

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1020001
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2088
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F006935	Metagenome	361	Y
F022884	Metagenome / Metatranscriptome	212	Y
F040624	Metagenome	161	N
F047676	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10200011	F022884	N/A	MLTINNLDKIVRYPIGYTFRVKSMVCGHTNYHISLIDGKGQYRDLKLNRMKGKRGNYKLSYGNSLTNLPFSDIHNLDLFCAHIKKLVC
Ga0208974_10200013	F006547	N/A	MKGLLILLLPLSISAQTYDTSYQMIYYQKSLIKKGKVELYGYTSYDLWWADESGMGITITIPNKRKKKKHKH
Ga0208974_10200014	F047676	N/A	MELIITLIVLIIVWCIAFMVGNKQGRNQLVNQIKKDGGYYDMEYTSSAYPILDPTSSVNNDTMGTKIEPCIGHELESQKEIEKRDIDFMHKWIREKSGK
Ga0208974_10200015	F040624	N/A	MKSEKIMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSVRLELLKEKFERIEKQISKLKN
Ga0208974_10200017	F006935	N/A	MDKRYAKQIIEWAEEAKEILTVRKEIIMDDDVTDEQLGTIIRMMYRAKVEAQNETITKTKENLEL