Basic Information | |
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Taxon OID | 3300027608 Open in IMG/M |
Scaffold ID | Ga0208974_1018412 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2191 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004231 | Metagenome | 447 | Y |
F014489 | Metagenome | 262 | N |
F015570 | Metagenome | 253 | Y |
F032957 | Metagenome | 178 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208974_10184122 | F032957 | AGGAG | MDDFNPTTRMFPRSLREAYPKDYVNENLIEGPFYSAPNIHDLPVLFALIAVLSMIAVAIWRYF |
Ga0208974_10184125 | F015570 | AGG | MNDKLDQAFDELEFDVTDQIRNMEYLAEQKKISTGVTDGSIQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS |
Ga0208974_10184127 | F004231 | AGGAG | MSVKPGDFKHEICVFLEGIGECLVCFDILSPEDELDPDHSDSYEIDFSVFDEDDKHITYDITKKQYNHCENKAMDEMRDITTQWHKEWETCFD |
Ga0208974_10184128 | F014489 | AGGAG | MEMKQQHYAILKRLHHGASSLKRFTDKDGEVGNQGFHYLRYLNDLQNFGLALEIGDVWHITGFGVAKLAEQTPRVSKDRVAAGTTTETYDGADLKHGGNRVGASDFLKYPSKFGDNLTYPRKYV |
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