Scaffold Ga0208974_1017134

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1017134
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2280
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium RIFOXYC12_FULL_60_6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034828	Metagenome / Metatranscriptome	173	Y
F058793	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10171342	F058793	GAG	LKDFMDPTQAQLNAHVDVCTLRYEMLCARIKRLENIMLGVSGIMLTSMAGIIFTSIK
Ga0208974_10171343	F034828	N/A	MVTAKKTTKAPAKVAPVKRSRPKPQPASQVNVTLAAPAAAPKPESKKDDSTLGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILQAITTQDKMPQLAKQEQLIMPARSLMKDVDGIVLLIHKANLATNSRTTVLALNADGTREKAIEGTVTSLFNASADRNAAMVAMLNNEVLCEEFNPSSKVGE