Scaffold Ga0208974_1015457

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1015457
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2416
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011756	Metagenome / Metatranscriptome	287	Y
F029021	Metagenome	189	Y
F034906	Metagenome	173	Y
F036551	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10154572	F034906	AGGTGG	MKNTHRVQAATDQAVRQRNYQRARQRAFTRLANTYPDVYRLYLEEEKIADEDMGKKWLDIDGNTSLTDTRTR
Ga0208974_10154574	F011756	AGAAG	MAEPRYLEGDEYALTGGYEELVDCKECKKEFDQVEYRSDTCSECEDKQVKREKERV
Ga0208974_10154576	F029021	GGAGG	MNLCQFCGWEIARPDWYHRYNGKMICDNCVMDTMSEREKEKAND
Ga0208974_10154578	F036551	GGAG	MNETLEALLNDEIRICELCGSNEWRILHAGDESNCECEGECLRVCDSTLLSDDGCDGVAILVRKRV