Scaffold Ga0208974_1015372

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1015372
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2423
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014838	Metagenome / Metatranscriptome	259	Y
F020529	Metagenome / Metatranscriptome	223	Y
F022636	Metagenome / Metatranscriptome	213	N
F041152	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10153721	F014838	N/A	MKESLKKIEELKNQLNTVKSELQKEFKAELKKIFVDNPTLDSIEMYLNNHEFNDGGDTSFYIGYEDLKIVVEGEEVEREWDNSTKEYKPNPVIESLFELFDDVQCIHEDLYGDEYEHLSITREDVLKY
Ga0208974_10153722	F022636	N/A	MSTYRRATLQDLAKIGYVPNTEKYYKHMAFAKKYYPPEATTMVMVVHSEYNDSTYDNSFQYIIVYDKDGNELPPLKKTAKECRENWNIDNLPIPNTSHGHYGASESDEPLDDVVIPLTIDVPEFYIKEN
Ga0208974_10153723	F020529	AGGA	MFSNKNIVKYCTKYFVLLTVGAYVFNTSVIFINQKSDVANLAGSALFAGLFISTLVILKSDVTKLVKKLEENKNKENE
Ga0208974_10153725	F041152	GAG	MNIVDYIVKNWDTLPKSKFDDDRIVIFKEIENWDGDYGHHSYEGIGVDKDGNVTWCYSSGCSCSGGPSLDTKKDLKVFVVNDGIDLNVDPSTINFNSLQVEFNSY