Scaffold Ga0208974_1012959

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1012959
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2678
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003539	Metagenome / Metatranscriptome	480	Y
F003658	Metagenome	474	Y
F031484	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10129593	F003539	GAGG	MNYIEDYNDLVQTLAAEYTRKYSMVERDDIAQELWVWFVGHPRKYKEWSELKEKDRDKLIAKSLRNAALKFCEKEKAKKIGYDMSDLYYYDTSVIEIFLPSIIGESYEIPTKIKDLGGTVKTNEISDGNNWLSLRSDIAAGYYRLSEVKQNILRLRFSIEQPDWTLLAKDMDSTPDGARMKVQRAINSLIKHLGGWRTYNEPDVVEVKEEEETVEDV
Ga0208974_10129594	F003658	GAG	MSMKPVNDLRGQPTFACICGCLMFKITVMWDMESREVSWYDLAQKCKECGTITTAPTPMDWRDCE
Ga0208974_10129597	F031484	AGAAGG	MNTTKLVAVVTTYARAAVPAVLALYMSGVSDPKTLAYAFVTAFIAPVWKALDPKATEFGKGSKK