Scaffold Ga0208974_1009094

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1009094
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3270
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F010915	Metagenome / Metatranscriptome	297	Y
F033034	Metagenome / Metatranscriptome	178	Y
F037694	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10090941	F033034	N/A	MKVPKLTKKAQDIVNQIMSADAVDIDHGRVDERVYYGQMHLTGEGLECNVNVNGDMGEMIISNESLNAAVVSDGTIEIDGEHIPNNEFGDITITLYKLSKINAV
Ga0208974_10090943	F010915	AGTAG	MKQKLPPHNMVVVDKVGLDLYTLSYVKYEECDIQQYIKYDLSSEDVSQFLGNN
Ga0208974_10090944	F037694	N/A	MLNKDQAFLINEFIRKNANRNLWEVSDKLYSLLSEITKVEQEIKNETETAAA
Ga0208974_10090945	F006546	N/A	MKWKYIGNRAGDATKGEQYIVEICEDTENYAKKDMPQFINVEVIHPPRPRFNMKIGDTIKICNPYYEMMKYSHPGFVPVKE