Scaffold Ga0208974_1008602

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1008602
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3387
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F045754	Metagenome / Metatranscriptome	152	N
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y
F073554	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10086022	F045754	N/A	MNTNIDPDKPWPFPTNIIQGDNDAKLIADCLNLLQDFTAFQLRGEIYYGYLDVKALKVIEELREAQDNEAKPST
Ga0208974_10086023	F073554	AGGA	MSIEFFDDGEDLDVVQYECWYWSVIDSMAELIMNNGQGKVMSHVAEAVLNKVHSGYVAAQEDPFKW
Ga0208974_10086025	F049625	GAGG	MLSEIDLKDWIEQPSIPLYDVPRETPVKTPNGMLLWFSHIDGMYSLSYDANGNPVHMKAWVKVNPYRKKQTP
Ga0208974_10086027	F026266	AGGA	MSTIDTITFHFVGELEDSGAIVDVQCQIDEDGDCRDLDSVHYQLFNVLDVISHSQWESLQWDASKKYKAEHMEQLTIDHDLDHA
Ga0208974_10086028	F054861	GAGG	MNTKLLKHSRELFKSYDVPEHVRRSYRLKWVRSIRNLGDKWLFAHHIQRKDTIQ