Scaffold Ga0208974

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1008149 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027608 Open in IMG/M

Scaffold ID

Ga0208974_1008149 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3482
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3482

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F016125	Metagenome	249	N
F100667	Metagenome	102	N
F102807	Metagenome	101	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10081493	F100667	AGG	MISIFSDTKKLEFALARLADAAKVDTGLVIKQEGAYIAKVMMQIIPPTGDKTKNGKTVPTVTGGTIKLKKASGLSINAKEQGENAILGDLFGGNKMAKEFQIGLFQRIGNSTEVPPRGGQNQTMGVSLGNEGGKKIRIYRKFWQESASIEQMKAFHHANRNKRGRRKQVTRSLVGRWAVQDQMWISNESADAYLAYVQKSVGLAKAGFAAAAMLGGVRVPSWIRKHMAKAGNAQGHFGANPFFIARTTGNKIPNLQRVVDGALKIRYKITISKVRAVLANRAVNLGFTRVVGGMPIKSDA
Ga0208974_10081494	F016125	AGGAGG	MAAVRDFDPTQINSDFSAILEQAGVAFTYQGVSVTGIWAAASNAFADFEDQRREDSKFTVFLLTSSVSATPKVTQTLSRASITYFIERVTLDAEGAGCEISVAKVI
Ga0208974_10081496	F102807	N/A	ASGRVWHHDVHENLLLLPNDLHNEWSVPVWRHQPVAIKQSNRKRNLAILGRSIAESATQYFYVHQEHYCAGNKTAAEQFGRIALSFPNLDDSFRYEVQLNLARLVASRREALQFAMGAHGVFPWCREAIASIIMLAFERNDGRRASFWAERMMSLPEPKEKDRPWTHEVKWYGWAGLDLAARSYRLADQPRKADGLQWAFHKHEKPAIRLTQKTLGDSTRSVSFREAWLGTAAQPETIEHVFLVRPDDKETMAMSKQFIHDVGQVRATERAMISVHIEDGMVPPHDWDKLVLASGVTLIDAENIKEILAAKKP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208974_1008149

Overview

Ecosystem & Geography

Associated Families

Sequences