Scaffold Ga0208974_1006968

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1006968
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3808
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F023292	Metagenome	210	Y
F038087	Metagenome	166	Y
F051701	Metagenome	143	Y
F061801	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10069683	F061801	GGAG	MKIKGIYKNYDREIYMSEYTPINKEHYRRLRFCTVVSVGINVFLLLVMVLR
Ga0208974_10069684	F023292	N/A	MNIKQVKEYVTNQLKSYKVTSIMKDWSDKDWERMYKQISPTKPYEVERRLIDWARHELDFFRQCLYKERHYEDLLIDHACIDCLRCEDVVRGERKFYVRRPQN
Ga0208974_10069686	F038087	AGGAG	MSNKITIVLSINSDSVSRFLFDDYINACHDAGMMIRYEPYTRDMYAELNDKALDIERQDALASLEEEILNNVACVNGSCED
Ga0208974_10069688	F051701	AGGAG	MQVLIELNDDQADEVLVESLKSGYEINLNFPDEPNFYEINQAFRTLLAYYMGDKEYAKYMHKRAKVRKNHNAKRLADAHSGL
Ga0208974_10069689	F006587	AGGAG	MNKNYEGTGYLLVGVILGIVFTWAVMEFTHLKDKNNKNLKCVQGELYEEIRPNFYVKSHLECFEQRSF