NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1006654

Scaffold Ga0208974_1006654


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1006654 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3904
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006587Metagenome369Y
F051701Metagenome143Y
F066456Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10066542F051701AGGAGMQVIIDLNDDQADEVLIEALKSGYAINLNFPDEPNFYEISQAFRTLLTYYMGDKEYAKYMHKRAKVRKNHNAKRLVDAHSGL
Ga0208974_10066543F006587AGGAGMNKNYEGTGYLLVGVIVGIVFTWAVMEFTHLKDKNSKNLKCVQGELYEEIRPNFYVKSHLECFEQRTL
Ga0208974_10066548F066456AGGAGVGFHINVYNMPRIQDYKHAKEIFSSKTVVRGENQSVRRLGDRYEKEKWLRQEIQDGVEVYTAGYYDTDLVRFYPTHKEITLGGYPSTSTQYFVEYISGVNLQQFQHKKYVPTPFTRSPMVKNHQIECYINNVHGLYYMNADDWYKLDYKNKSLDERQFETPVKYKFDARQMRELRLPYKKLLKYADTMLKLNDEGVELDNELNNQILPFTQYKNGEGVLTMYADEDKTYLSYYHAVRHTQHSRWQSSGGYKNYVNIGMIKRYLDKMIKLENPQVLVEVTPVTNS

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