Scaffold Ga0208974_1006294

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1006294
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4021
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073557	Metagenome / Metatranscriptome	120	Y
F086835	Metagenome / Metatranscriptome	110	Y
F093779	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10062941	F086835	GGAGG	MTETDISKVLIEGDTATIMGVKYQRIIEPQSFYDKLYGLLKPNLDERVDFHDMTIRVLDLIRENIPEPYKGVGLPEYSVGYNDGIREVNENLFK
Ga0208974_100629410	F073557	N/A	MTDEQIDIMVKMHRYLIQNEINHTFQRFYALNHNEDYSAANRLEAFNDTEWEKFAKWFKVIRDE
Ga0208974_10062943	F093779	AGAAGG	MRIEITQDISGTGDYRWELYTGPEHIDEYVGYCYSLGECFEKIIMWNTYNAQKYYGGTEN