Scaffold Ga0208974_1005859

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1005859
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4196
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011580	Metagenome	289	Y
F012661	Metagenome	278	Y
F026857	Metagenome	196	Y
F034150	Metagenome / Metatranscriptome	175	Y
F088497	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100585910	F012661	GAGG	MALKNRKPPNAKGQVIFYTDREKQALEHIGNGSVAEGARISIRWAAHFWRVGLRPDFDLNHVGICLFVDDPHADDL
Ga0208974_100585913	F026857	N/A	GNAYLSVRKITEALWVTGDAVRPLPVHTRPFSEDGIHEWMESTRMVQSKGIGTTPIRDLQGNQSGIDQNNEGTK
Ga0208974_10058596	F088497	AGG	MNKPLEWQALWDAMDTNPDQWIPTTEKMYWEMLEVLPPRKQSRGAFLVGEASNHNAEGYPVYSCFKREGDSFFAKSMTFNQFNQEVSA
Ga0208974_10058597	F034150	GAGG	MSTGTNAPIKPSFDGQIVKFISPHANVWLYDICRLNAKYGHLEWWALSEPTTDQKNQAKEVTV
Ga0208974_10058598	F011580	GAGG	MTQTQALTKALILAITAPDDDRAHHASRLAESIAQGLNADQVEQCKANALFILGENP