Basic Information | |
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Taxon OID | 3300027608 Open in IMG/M |
Scaffold ID | Ga0208974_1005542 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4332 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (10.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009684 | Metagenome | 314 | Y |
F012345 | Metagenome | 281 | Y |
F015976 | Metagenome / Metatranscriptome | 250 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208974_100554210 | F009684 | N/A | SSPLENSPYKRTTRTTNNDMIYKLTYSDKSAAVADLYAKGILIEVDGIDGEKHEAYGNGVAAVVEIGLILLTPPVMEGMEVIEEPIYAEGYHYDVMSDNTYDFGANLVEPKNPKHAFAGHATTEEFPYEPQFLGDEA |
Ga0208974_10055422 | F012345 | N/A | MRFKLTYQVGLAVVQEWIFTSKGLAYWKKMDLLESGRFNDGQFKVTRL |
Ga0208974_10055427 | F015976 | N/A | MRSSLLILSLIFTILATSCSVNYHVRKAIKKGYRCEEVADTFVINSIDSIPYVLRDSIMWERVLVQKDTIVHYKRSYVPKTRLQTRIEYKLKRDTLRMIEKVEVVKYKTEKHKNKKPNLWLFIIGFGIGFLAKWLMKFAKYTL |
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