Scaffold Ga0208974_1005395

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1005395
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4395
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019829	Metagenome	227	Y
F061848	Metagenome	131	N
F063688	Metagenome	129	N
F072334	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10053954	F061848	AGG	MNFLIAKIFTAVTISMTGLAFAYEAHNAPGALPVTPPVTVSLAPLPTTTTTTLAPLTDCQYALQVATQVGWPLEEMGTVARIIYRESHCQADAFNAKDTAGGSYGYYQINGYWCRPNAYWPTGWLQAQGILETCEQLFDPVINTKSALAIWHNSGYGPWRLPNL
Ga0208974_10053955	F019829	N/A	MTEYPIPDPGLTESTRQMYTEKYAETFKNFVDEVFRPNFIPAPKPVDHSILLDELAILKEKYLNGTPSDEHKFAAAVITAAMAVIIGI
Ga0208974_10053957	F072334	GGA	MSEIVETPNTQLQKVTLLIAMHDYDTEQLNAGEWLQNVLMNCAEQKNTGYYGAKELTKVMQVLSVQNCDVVVSNGI
Ga0208974_10053959	F063688	GAGG	MSRYNSNYGSHDQLQDLRKLNMELHHELDAIKRLLDETTKSLQQSQDELYLALEALRRQM