Scaffold Ga0208974_1005302

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1005302
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4441
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008496	Metagenome / Metatranscriptome	332	Y
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F043404	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10053024	F008496	N/A	MPESNATFVKEMVEAGELKPLYDPKATIVVRKGYYYGTPSDSKFDLENADDISRTYWRLDALQETNNRNSRAQDKVKDYLVENYDEIGEEHATEIANILGIDLSKEVEVEFTVTIKATISMPVNEDVSDLSVYDFDITLESNESKYEVQEFDADIDSIDERY
Ga0208974_10053026	F043404	AGGA	MIDTDNPLLQTLADDFVELHGVGGIELEQWETAYKFVKHFYHTEEMVQIIVRGKK
Ga0208974_10053027	F016662	AGG	MTYLVATTEVIYDEQDLIKMMLETGEYGIHGYPISHEAMIEFVKDQEWQIEHHLFLDKFNVPAQISIKDEDGTDLFFAKNKLEIK
Ga0208974_10053028	F030094	GGAG	MKLRGIFEGTFESVWSMEVPQYEWDNYLEQHPDFDENDRDDIQEMWDYFKSIGCYDEIDDTADTDVIMTGIETYGVEVEIN