Scaffold Ga0208974_1005176

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1005176
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4502
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023321	Metagenome / Metatranscriptome	210	Y
F024533	Metagenome	205	Y
F057311	Metagenome / Metatranscriptome	136	Y
F091391	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100517610	F091391	N/A	MAEIYTFTPKTKPQRFIELDRLRAKLLELHEARDALNKEIRYTKDAITLLEKGEK
Ga0208974_10051766	F023321	AGGAG	MFFTQAPQFPTMYTWNDVQRKAEETTLKTIDFNKVLIDHTLDYFDDITGKTFTTYKVKASNFNNNVAEDAKKIIRAESKKTKD
Ga0208974_10051767	F057311	N/A	MWQKMQKKSSGLKAKRLKIDIEYKTKFWHPVVRNGWWLKFSTYRDHFILLMIVSQYTGQTIIRYYEDENEAVAFINFVTTCNSQDILLSA
Ga0208974_10051769	F024533	AGAAG	MPIQKTCPRCGVSHTKRGPYCSRSCGNARQHTEEDKQIRSQKLLEYHLTPEGAATRAKSGKIVTAIKRGEDWSSVEIDEYAINIPDVTDYSADYDDSWQRAEKW