Scaffold Ga0208974_1005146

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1005146
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4522
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003291	Metagenome / Metatranscriptome	495	Y
F017998	Metagenome	237	Y
F037728	Metagenome	167	Y
F038234	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10051461	F038234	N/A	MLTIKNIDSLKGTYVGHWKIHYVAKLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETDNRHYLPIESIRNSYT
Ga0208974_10051462	F017998	N/A	MEIMNLERLDLEKYELLELERNNTISDPLYQQWMSELGVSSSYSDREGIIRANDLNNQYTYSVLGGNKSTKFSVSSILSVFK
Ga0208974_10051463	F037728	N/A	MKRLNITNFTKRMMEIHSDFFMVKHCSEDRDKYLIGLEVRDVISFKPLGPKYYKMAIDKVCRVDGNYGIWLWDIGENISYPMSIMPDNISSLSEFTSFLNNTLKVADRGDFSGDVGNRIDNK
Ga0208974_10051469	F003291	N/A	MSTNQMNEKLVSVFNQDELAALMTAMAGYINVKRKQGRATGIESVVFNKVTDALLLSNYMNATVIDRGNGKMGVAEYKMSEAQLDAMYDSDVKAHS