Scaffold Ga0208974_1005008

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1005008
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4597
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F012774	Metagenome / Metatranscriptome	277	Y
F012978	Metagenome / Metatranscriptome	275	Y
F017132	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100500813	F012978	N/A	MMNFNKTDEELKMMSDDELFEYLDAKTLHLKQHTSPLSSYKTKKFASIGAAISNTEFDYDSVKQIAKENEQKGYEKFIKDKNKNNE
Ga0208974_10050084	F006935	N/A	MDKRYAKQIIEWAEDAKETLTIRREIIIDENVTDEKLGNIIRMMYKAKVETQNETILKTKENTRL
Ga0208974_10050086	F017132	N/A	MIRKMELGKFGDELYEIVKKIPMQRFSTELAGESAEALKRYYGVEKILKFPQTQEYLFVNLIEELQIQTNDNKETSESNES
Ga0208974_10050089	F012774	GGA	MKENPIILHIELGNQSVYDWLKENQYVIFSELIRYSKKLLDENLDMVQAIMVSNLSDNIVFIIKRDNVKLTLDKAMEYFMDMEEYEKCAEIRDLDILIQNLENEATNIKVSKSNQRKLKVNR