NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1004442

Scaffold Ga0208974_1004442


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1004442 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4918
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006547Metagenome / Metatranscriptome370Y
F007690Metagenome346Y
F019478Metagenome229Y
F024555Metagenome / Metatranscriptome205Y
F038242Metagenome166N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10044422F007690AGGVDDIDKLNNMLTIKNILKLQGQPLVDGWETNNIYEGNHNDTYIFELVKRKPYPIHNELCTIMLERTGHKIFGQPGLSYFFIFDSQRTNVCASADWLADKDNMIERLEYMIMNKENI
Ga0208974_10044423F038242N/AMLTIKNIKELELNFCHSRGLREITETQNKLGEQFYSFHFGPISDGKGYNKEIEVRLGRDVNGGEYQIFVMGLHLATRHFVTIDDVKTKGGLASEISKVLAKAEHWWKTEVTK
Ga0208974_10044424F024555N/AMLTIKNIEKLTQYGAVEDWRVGKVVTLDSSYLIQLYKHNRRETMQVNIERTPIGEGDTALYELWFWADDSGGAKPIRRLLRKCDFELGPPYVIKNIENMMNLK
Ga0208974_10044426F019478N/AMILKIHNTNRMVGTMFWNRRFTCQQVHETDTNYRFQFDDSEVPSRYVWVEVSKIGRMDSDGDWSYSLNYMRCNQHSITAKWFENWKNVTKTFGDALKKQF
Ga0208974_10044429F006547GGAMKWIFIFLFPVLVSAQIYDTTYQMIYYQKSLIKKGKIELYGYTSYDLWWADESGIGLLYTLPNKRKKKTKRK
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