Scaffold Ga0208974_1004298

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1004298
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5012
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016374	Metagenome / Metatranscriptome	247	Y
F030663	Metagenome / Metatranscriptome	184	Y
F044299	Metagenome	154	Y
F056408	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100429812	F056408	GGAG	MDEAEIAVNKRIKQLMGQTLDDKFKETWSTMTPADLEKFVKHFAELLIRDCADTAYRFDGLTLGQGYTIAKHIKKHFEVDE
Ga0208974_100429813	F044299	GAGG	MNQISQYLVSIDRPPYVDGRRVGQATPCVSYGRPSWFISFLDGYTHSNNPVFTDEDGLNGAPTVQQYANNLGYEPCMN
Ga0208974_100429814	F030663	AGGA	MYELIFTFLVVTKAGIPGFHIERISQFRELEDCEKTRTSMVVYMDKLVRENKMFPGVFECQKVQR
Ga0208974_100429815	F016374	AGG	MNKEITLTPTGGRFYRAMAFHWVTVAVLMPPLAIAMIAAILNPFWFRDSMFNFVERKINEFTRWRNNVKYRIYLGCDPVVWHTLKGDLK