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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027608 Open in IMG/M |
| Scaffold ID | Ga0208974_1004240 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5049 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (94.44%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026266 | Metagenome | 198 | Y |
| F034150 | Metagenome / Metatranscriptome | 175 | Y |
| F045754 | Metagenome / Metatranscriptome | 152 | N |
| F049625 | Metagenome | 146 | Y |
| F054861 | Metagenome | 139 | Y |
| F054866 | Metagenome | 139 | Y |
| F073554 | Metagenome / Metatranscriptome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208974_100424010 | F054861 | AGG | MNTKLLKHTRELFKSYDVPEHVRRSYRLKWVRSIRNLGDKWLFAKPITRKENS |
| Ga0208974_100424011 | F026266 | AGGAG | MVETITFHFVGELEDSGAIVDVQCQIDEDGDCRDLDSAIYKGIDVLEVISHDQWENLQWEGSKKYKLERDTQAGIDFENSL |
| Ga0208974_100424013 | F049625 | AGGA | MLSDIDLKDWIEQPSIPLYDVPRETPVKTPWGMVWFSHIDGMYSLSYDGNGNPVHMKAWVKVNPYRRKADE |
| Ga0208974_100424016 | F073554 | AGGA | MSIELFDENDDIDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVSEAVLHKVHSGYVVAKENEDPLAW |
| Ga0208974_100424017 | F045754 | N/A | MNIDPDKPWPFPSHFGDTHEDDKLKADCLALLQDFTAFQLRGEIYYGYLDVRALKVIEELRKDINTNEAKLST |
| Ga0208974_10042403 | F034150 | AGGA | MKTTGTNATVKPQFEGQIVAFKSPHANVTLFDICKRNPKYGNLEWWALNDPTPEQILSVS |
| Ga0208974_10042405 | F054866 | AGG | MSKYTITHGSIAAVQYVTLPDGDRVTVTDARDGSEVELPRLPLEVQAAVNRQFGTIFALPYDSRQGFIDNSIPFDVEVSE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |