Scaffold Ga0208974_1003949

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1003949
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5261
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F006112	Metagenome / Metatranscriptome	381	Y
F010227	Metagenome / Metatranscriptome	306	Y
F010760	Metagenome / Metatranscriptome	299	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100394913	F000652	GAGG	VTGFQSKRASALAKTKDYGMKKVIVRTELMQELEVPDDWEREDVLDFLGEFQSFRTAFQGVSNEDQSARIIDLGVVIETVEQLGEETFDE
Ga0208974_10039492	F006112	AGGAG	MKQDYTMYIYKTDRRTRTSERLYSTTVWTDRDQAGMQREVEELHLHHYPRSQFRMEYCPTMKTVTNLMSGAEISIPHDTPRACDPSSELYWSM
Ga0208974_10039495	F010227	AGGAG	MQATQFDVSDKLTLASTDTDTDSISTTYDCNVEVQLAGDSIWDCEIEAVTVTSIHIHERFDEDGDSSIHIAVCYNVNGDEEYEDSWRLYTDTGFEEAISELLGTRVFFTEQGMQDDGYASME
Ga0208974_10039499	F010760	AGGAG	MLDITKIVKTYNGKRGCMCGCLGKYSYTADGATNHGPGYDVTDAVNERSVRIIAKKILAHPDVKWQDNIAYVEEGGRTKAIYFKEQA