 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027608 Open in IMG/M |
| Scaffold ID | Ga0208974_1003110 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6036 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (87.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004231 | Metagenome | 447 | Y |
| F009514 | Metagenome | 316 | N |
| F014489 | Metagenome | 262 | N |
| F015570 | Metagenome | 253 | Y |
| F020664 | Metagenome | 222 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208974_10031101 | F015570 | AGG | MNDKLDEAFDELEFDDVTDQIRNSTYLAEQRKISTGVTDGTIQRALVRDLTENLRSLPISNDPLLLRNDVLEEVAVELARLPFGDTAASFAAFVRAMKS |
| Ga0208974_100311011 | F020664 | GGCGG | MEKPEIKHNLIRFSEREREIMRTIGGGNLSEGARICVMWGAHFWNLGLTTEMDLKHIGLVTVSTTDNYPHE |
| Ga0208974_100311016 | F009514 | AGG | MTNNQIKALQSIGKGIIESANLSPTGAPSGIIYSALMGHGATLNQFNSIMDTLVKHGFLTHDYDCHVYHATPSGLAWANKV |
| Ga0208974_10031104 | F004231 | AGGAG | MSVKPSDFKHEICVYLEGIGECLVCFDILSPGDELDADHSDDYEIDFAVFDEQDKHITYDISKKQYNHCENKASDEMRDITTQWRKEWESV |
| Ga0208974_10031105 | F014489 | AGGAG | MELKQQHISILKRLAHGASSLKRFTDKDTEVGNQGFHYLRYLNDLQNFGLALEIDETWHISGFGVAKLAEQTPRVNKDRVAAGTTTETYDGADLKHGGNRVGASDFLKYPSKFGDNLVLPRVSL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |