Scaffold Ga0208974_1002826

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1002826
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6387
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006894	Metagenome / Metatranscriptome	362	Y
F027781	Metagenome / Metatranscriptome	193	Y
F078640	Metagenome	116	Y
F085621	Metagenome	111	Y
F088545	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100282610	F088545	GGA	MKVRQIRRRAKTKYVTEAGFAFLRGCFAKRCRTYEAGCPTCDEWRFRDEHGRFVYNWDELRKYMDTTEEV
Ga0208974_100282611	F085621	AGGAG	MGRFKDIAIGMVEDHEQVQGDLFIDDELRTLMQNFKPTAEELQAELDELQAHAMSLPSLCVQPEVKVYLLMKNGFPQRSYTDRALAFYECWICTEGDMHAETPDDYYVVEIMHDTSTYTG
Ga0208974_10028262	F027781	AGGAG	MNTELSKPKHLISLASSAVLVSVDANVWSATKQDRGISNDVADSKHADRKAGKYVKNLLADHPKHKALVNYRQTIYNWVKRRTYRWNNSQDLLPSIDVPKFKQEFGEHKASFEKLLADFILSYDGIVSDMAFKAGGMGDMFDRLDYPPKEALAAKFGVELYVSEVPMSDFRCGIANDIADDLFSTYSKQAEDIVSSIVNEQKTRFIEVMQSISHCCGVDEIGVDDNTGETKTRKRKIYDTTIQKALEMCETFKGFNLSDDPELEVARASLERALADVDAKSIRESDAVRSSVKEDVDSILSKFSSFQCV
Ga0208974_10028264	F078640	AGGAG	MMYGDDMSHMVSVFVPVGRDKPCLPYDEFITEGGFHPSSFAESSEYGRHFYTKYEFPNGKKVSVICGAMFYSRTDAPYEVMFEDEDEPYGYQTDEELMILLAKAIGDA
Ga0208974_10028269	F006894	GGAGG	MNDFFWNYRIVNTKTANGGEDWYCIQEVIYNEDGKPESYGEPCLGSEDMESFGDVWHMMQEAMTLPPLQEEDFVQPTQEYFA