NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1002064

Scaffold Ga0208974_1002064


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1002064 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7642
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F003299Metagenome / Metatranscriptome495N
F003327Metagenome / Metatranscriptome494Y
F009004Metagenome / Metatranscriptome324Y
F015420Metagenome / Metatranscriptome255Y
F029102Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100206410F015420N/AMKKLINYFTPVGAEQIAFAKALMVVVTAVILIVFLFPLLNLLS
Ga0208974_100206411F009004N/AMKTFNEILDYLEVQQQEDKLNTNQLHLIIQTLTTFLNKEQLQEIENLFNQMNRINEKIN
Ga0208974_100206413F001808N/AMRYLAIILLLSSCSAQYHLNKAIKKGYTCEETGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYKTTYVPRTRYQERLAYKLKVKTIYKDRIVEKAKAKASQPRPRGNLSLLFVGVGIGLLLSYLFKFAKDKYLL
Ga0208974_100206416F029102N/AMKHSGILSFLTFGFGYLSGISLVFADQLHFKFLGCLLISYFTFLLASEIESKE
Ga0208974_10020647F003299N/AMCQLKMIEMKMYKVVYKTFDYWNGPVKLVTRIIEAYDADHVKQLIQKNDDLILLIEEV
Ga0208974_10020648F003327N/AMTEFTQLAIKVQDEIANGDYTHQKYLQFREWYFQNYDGSKRNAVRDFKMFDLMYGLDVPIKNDRNEDV
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