Scaffold Ga0208974_1001770

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1001770
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8378
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004005	Metagenome	457	Y
F039033	Metagenome	164	N
F057944	Metagenome	135	N
F060707	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100177015	F057944	AGGAG	MMQEEVEESHPTVRMFPRTIKEAWPKEYVNEDIFTGAYREPQISDFAILCALIAIVWFFFYMFSKYIWS
Ga0208974_100177016	F060707	GGAG	MRKPIGITYPLRILTETPEEAEVFSAMEQSSVRKEAIRNPSKEAKLVAEVAILSELVRVLSDRVTELEAKYETTSTN
Ga0208974_10017702	F004005	GGAG	MNANVLVTTQEQFNIQMYGFADIDAYIESVKQSTTYKFTGASMVVAGLLSDAQELLSHGDAERSRQTLNVAKAILFEIVDGNLVLTVERK
Ga0208974_10017706	F039033	GGA	MTPDLYQFNCEVEGVELQCKLEYEPPEENYPDAPDIDECMNLVNAYTNGVDIAHLLMQSLVDHICESALEDMKENSNDY