Scaffold Ga0208974_1001381

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1001381
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9537
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (92.31%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023107	Metagenome / Metatranscriptome	211	Y
F037064	Metagenome / Metatranscriptome	168	N
F041011	Metagenome / Metatranscriptome	160	N
F043392	Metagenome / Metatranscriptome	156	N
F066766	Metagenome / Metatranscriptome	126	N
F071220	Metagenome / Metatranscriptome	122	N
F091353	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100138111	F043392	AGTAGG	MEIVDKYYHSNGSAVPFIAALVDDPADGDTKIVIMFDERDFTAVLSLDSLLRDEDISARNNGYHGNKYEKLREDLWDGFLD
Ga0208974_100138112	F091353	AGGAG	MIKTSIDLFDETCNAVSRGELDKQLVPLKKLIEERLSIVRVDADIKDFVVGDRIVLNSSCGTKSLIGDEGTVVAIRRSKITITFDKPKGRFARTNSKGEIYSANAVVPISIVDKI
Ga0208974_100138114	F023107	AGG	MDNILPSRTVMFVGDFFTLMTTVVLDETIRNEGEDDNDFAVRLASILMSEIYDFDVASVANSVGVVDEEGVEV
Ga0208974_100138115	F066766	AGG	MIKEVELEYTVDTLAKLVRDNYGKNAVEYLVGRLTSVITEKQLKVLIDYEKGVNG
Ga0208974_100138120	F071220	AGGA	MTNNVKGVVDTVVAIRTTTTTIKNDTKVIALDETNAKELLAKFEANKADKATLEAQYKELQAEIYSLLGYKKVGDKWIGVAEEGTIDGVSVIKVGTQTRTNFDKEKFLQENPALLPLVEAFTSQSTNTILKTTR
Ga0208974_100138124	F041011	AGG	MHTCQIMLVEADSAEEALSYVRSTITHAETPYPAWSDWHGGLGEGLAGRWSGLFLGWEENQDVLCYTENKVLADDIIKKFVSYRITEAKNLWDEMKKGNGFDVEKSISEYNPYEQRFDDSGMNMWRLQRISKILNNDWCSDTGVYDLQEHTANLQYFKDRLDKNPEKQYLVPVDFHF
Ga0208974_100138125	F037064	GGA	LGFHSASYLRQRRKQKVKNMERDESKFVIKYASHMLPSAGLKTYGITRFDACFYAGEGHIATVLYEGFAVDIYCDGDTKIYNRSTDQYYTGGADLILGGFDTDTKFHKATEDESLVMDMNSWFDLYCYGEHFDMPSHMLNEAIDMAKEYVYAEYFNAETLLGMPDMLDK