Scaffold Ga0208974_1001116

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1001116
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10628
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F011473	Metagenome	290	Y
F011827	Metagenome	286	Y
F016246	Metagenome	248	Y
F016922	Metagenome	243	Y
F025916	Metagenome	199	Y
F026794	Metagenome	196	Y
F037053	Metagenome	168	Y
F051685	Metagenome	143	N
F057879	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10011161	F051685	N/A	MNTPNWLRFRAGERAHVVLGMSGPMLITPCGYAAHGATGVPDKRARKCRTCSRAVRPVSLQEWRKAGHAPE
Ga0208974_100111611	F026794	AGGAGG	MMHSGDNPGSISERDLRVTASQLRAAENDAREATRGEVTFDELDRRYADPISREELTALLPFIIAFTERETVWCYELKERHGRPTPTWTPITEWDAHFKPQCLSLEYRTDNPFATE
Ga0208974_100111613	F009945	GAG	MSAALATFKRAHGIATHRLTGAGHRYAWMAFFATITMKDGTRRAFTELAHEYSMASLMRRNKIADADTELEACQFLAERNGIPWPAAEPKKRKAKP
Ga0208974_100111614	F037053	N/A	MTTPTVDDIIADLESRGLGWSLDHIGQLIEALVWDWPNVIGRYRPATVEPLAKMLATACFAVDWTAYPVKP
Ga0208974_100111620	F016246	N/A	MSQLDFFPHIPRRLTHDEILAGFAELLRAVEAMEFWEPCP
Ga0208974_100111623	F025916	GGAGG	MPTHLTRPLLGCRLRDCGAPDCPTCSGAEAARQYREQQECDHEEHEHGYCLTCGADITDELVGQAEDAADAAQDR
Ga0208974_100111625	F011827	N/A	MRNRTHSANTHLNYRSRWKVRDALSSKRHGESCDDIRLACHLWLLKRCPGYAQEHAELVDMAARNFTRA
Ga0208974_10011163	F011473	N/A	MNWKKYITDPLTNRPKRGAISRIAALLGVHYGNVRRMFDGVWNPTEQEANGLRAIVESRTNLAPKKRSDAGKKRGEYRKRAVAKSCAVPPQLKGLRSAKNTAQK
Ga0208974_10011165	F016922	N/A	MSNPIRISSRAIQCRADAEGATEYAIRSGGRDFLVTAHSRLEADIAVEYYRAPEADESQPDLIK
Ga0208974_10011169	F057879	N/A	MSAEPSQEPTNPRDTARPVPVPSGSEQEPESPFAGASQVPPWEL