Scaffold Ga0208974_1001113

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1001113
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10634
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030426	Metagenome / Metatranscriptome	185	N
F039137	Metagenome	164	Y
F045092	Metagenome	153	N
F045742	Metagenome / Metatranscriptome	152	N
F047057	Metagenome	150	Y
F057367	Metagenome	136	N
F063694	Metagenome	129	N
F072328	Metagenome	121	N
F093502	Metagenome	106	N
F101138	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100111311	F072328	AGGA	MISILLVAALAACIVYIVGSSESVDNQCGVDLKYHNNKKGNKK
Ga0208974_100111312	F030426	AGGA	MKPRITTTPQVLINEILGSIAWRHLGIADIENLDEDPVDQYNRIKIREALAEAFLAGAAWGLDTRKENTK
Ga0208974_100111317	F047057	GGA	VKLPRFTSGSIGRLDYKALNQAFTAIEKMDGRPQDMGEYQGAQRESFIATITGLMTDSVQGANQTTGQGTLFKTYVYNWNEVDISYGSAGTGSGVGVSDLKGARGIDYASGVTITPPKSYYPAIDFAPYRRFATGDVVLLTRCAVKSGSTYSMMYTITPVSAVTPFLARLTSVVGGTESGRYAWTGLSRKIEGTTALNTVATNLYEKNRICTPGAATAQSVNGASWDGTNTWGHGQDATGVTKLDLPVGGEGAGTIVVMHQGHILESTGGTTFWFYAISPVTCA
Ga0208974_100111318	F045092	AGGA	MADEINISLNVDVSSGNYRASFRPGTIQPDMATIIGSDLSQNIGTTIENLNIGADVVAGGYYWFRNLSTETSTTFNPSIKISSCAATAAGTSFPFLNLRPGEYALGRCVTTQFSAISSTATANLQFGIMSL
Ga0208974_100111319	F039137	AGG	MATVYELFTSRKYLNNEGKPRAERQFVVVDAATEGDVVALLGTTLPGEYENYPNDAALPYSMLAFDYSITKDPSAVSTWQVTMRYRAEIGAAQAFNNPTSPELSPTEVGYRTARLSMTAEFRDTWRDFVSVVAMQAIASGNYDMTDIGGNSIDVGGIPLSALVYKQEISILITDQFLPDAQAIATQIGTRNASTFLNYPSGSVVFAGCNCETIPEVGRNSIEYRFVYDASYHQIQYPVKANNGSPILAAATVGTILKGSAENVYYKQPFKYTSNFNNLSQYFTGL
Ga0208974_10011132	F057367	GAG	MQENHTTSSGIDLMTWLNFEAAITRNPRVAQSLRDSAAEIGNLRTQLKAAGINNYNELTSALRDMTRTAEVVLTTPHLQIEQRENARADMAESVRYCKKLMQS
Ga0208974_10011135	F101138	GGTGG	MNADELAKSIRSKHDKLETDCKQTVLAVELVALQMKLAALTARVAQLERDDLERTQTQEQ
Ga0208974_10011136	F063694	N/A	MITEMQKQLNTITVGSILAADQLRELHGAAKAAQARLRELIQLIELSAIEHIETTGHDIELVDGKRWYVGSEKKIKAIDDTMILQAVLESSGGDVMKLTTGEFGVLCSNPWKNGAVKQLIGQEKFDELFLTSTVQSLETGKAAKVLKVADPAFLKGGTQ
Ga0208974_10011137	F093502	AGG	MWPNAQWGDEGNELRAIFKKHLSGLMQNHLYTAIDEVKVNFSSHQPELKWFISAYDRIVDSNRKFESGATRATDKWWVDFERPSKHTGLPYKFSTDAPDFKTAKEIAASTGGRVRNHSQVIEQDSLVHFLKVQPRADIAEAVSALRARGIMSKDQLPSDISQWRQATIGFVTHQLQTRKQKELA
Ga0208974_10011139	F045742	AGGAGG	MKSRSEVKRKPRQSQAGRLARKHSGNGWCDIETNFPPSIVLAACDKLERESFGEGTAGVRAKTRRNARTLAALLEFTDLRVVDVAKLLNLNRDSAWNLRRKWIDLDEEQRQRWLGVVFARLK