NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000904

Scaffold Ga0208974_1000904


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000904 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11832
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004366Metagenome / Metatranscriptome441Y
F013186Metagenome / Metatranscriptome273N
F016965Metagenome / Metatranscriptome243Y
F019139Metagenome / Metatranscriptome231Y
F037224Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10009041F013186GAGMRVDNRESASVHLPGGEYGPRILRHGMRRALDSYISSNYKEVRAYTTYFLKKMGSYIDADTVINNSYLHVINIDGDPGKVKSYLLNTIKYQVLWSCSKSNKDDRITAIEHPLTEPIDNDDLYYKLREDRIYSFNKALIEIYRNEITDKVQKIVYEAYIDRGYVTAKSMAIYFGITTTSAYYLIKEIKQNLNELQYRYESEPIY
Ga0208974_100090410F004366N/AMNSLQAITNHIITFYTAHKQVFKVGSDFKEQLYNFATANEKYPLVYIVPSSVSPTENTTEFTFDIYCYDIIQKDRANIITILSDTQQILNDLFIYFTDSNDYSFDVIGLPIFTPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI
Ga0208974_100090412F016965N/AMFEINGETYTITGPVERLNDTQLHVETDKGIILIDDTMDIFKEL
Ga0208974_10009043F019139N/AMKTKTEFLGKTVTTYHGNYSRTITVTEETAKEHKYYTSIGLGYLFEESTPKAKYKGVENEEK
Ga0208974_10009046F037224N/AMHSEILHKIQVVQAYIHHKTGNQVRIVFNRPDRMAEHLQLLDRAYQVAMGDFRTKT
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