Scaffold Ga0208974_1000845

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000845
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12231
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016388	Metagenome / Metatranscriptome	247	N
F029419	Metagenome / Metatranscriptome	188	Y
F035302	Metagenome	172	Y
F041650	Metagenome	159	N
F082668	Metagenome	113	N
F091376	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100084517	F082668	N/A	MSDQLATIVVALISTIGIVVVGLMQMFKKEARANAKENREDHAIVSQQLRMIFKTVNRVDDKLEKHLDQHKEGNNGKSMPQK
Ga0208974_100084518	F035302	GAG	MKRPYTGNNDGLALGERKGLKVFYTELTKLYPSLWNNGSFVNRSMRGKQGVLSTHATGRAVDLSFRFMPNHKDSSNTKGIKEGGRKQAMQAMDFVVNHADAFGLECILDYYPIPHGRGWRCDRSSWQIYTKPEIHGAPMGDWIHFELSPAMADNADAMRQAFNNLAKPVTV
Ga0208974_100084519	F016388	AGGA	MNSIIAKTLDLCQRLISLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLAAASVDGELSAEEISAAFGTKITRRAAK
Ga0208974_100084523	F091376	AGGA	MKYAQWTISRPEGSTPEPLIRSRGGQASGGFMKDENTVVGYVWSDCDLTGLDKWNFSTMTNTQAMTIAQGLNPECFFGDDGTIQAPQVAV
Ga0208974_100084524	F041650	GGA	MREDIQLSFIECQMPRTPYQLERFVVGQHDTPEMQFVQVCRELEALYYTIKEVGMANKKTELEIAKLRATGDEIDSIDADIKELGLERTRLVAIGARRELDELIKMYDAMPHFTRQQIDESQPDYWQARLGRQANLQMMAGGAGWAHLEALDQIGVLQPMIQAQQEKAKELL
Ga0208974_10008456	F029419	AGG	MPRFVVVLLLVCYRRILCVARNLMTMSDDRKGECEGNRDKCNLPACPKFGTLGRPSRDGNRRVKGCSDPAARGKRARTKGLSKQRTARKRLGVAPSNKFGDANEENWQDVLFANEVKAGKQIGAVVTAWLRVDAQVRSNESDYGSRRKPTRAILMPDDWGKEGLVMIKLSVWEELVRPAMTEYYEGIS