NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000743

Scaffold Ga0208974_1000743


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000743 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13151
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F008808Metagenome327Y
F050167Metagenome / Metatranscriptome145N
F052382Metagenome142N
F057118Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100074314F057118AGAAGGMNLNNYKITIKTTATLVYHISEYDIDRAIELAIDAPYREWEVSEFDMPTGADVIAEEI
Ga0208974_100074318F050167AGGMSTTTTQVEDYLASISLTLADLANELATVQFDVASVNGYEPKGTILKALPTQTRFKPKSVWVSLGNGKYQHLTGEKGLIAKHSRLDGYTSVVFRP
Ga0208974_10007433F052382N/AMRMSSYGKRKGATFETSVVKWLRLKDILAERLTKAGAKDEGDVVAFLDGTANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVIVKRRQAGIDKAWVVEDFEQWTKRAGK
Ga0208974_10007435F008808AGGMDNKVPPCPECGEQFDNVFQATDHLLEDDEEFDPSLILPNGSRLMIGSLLRCLYKYAERPEQVKVITQSAYMTLFTAETQPDAIKDIVEEMIIKSQMMEIDDELKKLLEGGE
Ga0208974_10007439F001531AGGAMVEREDIKQSLYQWFAEHPNKLKDWEAIGEKDAKNLIYRSLRNQALDYCQRWKAKSLGYDLSDLHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGKPSAPAEGGNLTIMMLEIDAGYWKLNKEDRNIISLRFAENLDFGEMANILELDTDSAARMRLKRSISRLINKIGGYKPYRDVDTVASEEDSYPPVE
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