Scaffold Ga0208974_1000714

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000714
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13429
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006936	Metagenome / Metatranscriptome	361	N
F011668	Metagenome / Metatranscriptome	288	Y
F014504	Metagenome / Metatranscriptome	262	N
F025459	Metagenome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100071425	F014504	N/A	MHDQTRGPAEYDEASYTPDFFSFDDPYDTSENFFEDPGAVRGVRITAYREASEKLLVVLNKTISFLAEHGYSRSKTLWGVAFALGHPLTAGMSMLEAGRELGCTKQAISKIAMDFLDTTGLPPSTSLKSEEARNTYRRTNTNKYGVKKTLNLPI
Ga0208974_100071426	F006936	N/A	MEPNEITALTLPVIETEIRTAYAEANALAVTAKGNARAAVLRMADCGQMLMVAKDHVRGNRNEWLASLGIDPDKAAKAIHLARNRDQLELDLWPADMAKLGAQMLGILPPPGSAGREENDPERTTGASTHWLTYAGKLQRSFADLFTRKPVEQWRHDERESLRIAIKPIAELYEKLK
Ga0208974_10007146	F011668	AGGA	MSAKTIALWMIVISFAFLGMALLTSCAGFNNPAVCVKTDYGTFCYELPDIQGLKK
Ga0208974_10007149	F025459	AGGAGG	MKMTLEYDETERYEHEVACKALDILILVDDIDQELRSALKHECGAFAKLDEDTMEAVRAWIWEERTKRNIPELI