Scaffold Ga0208974

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1000709 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027608 Open in IMG/M

Scaffold ID

Ga0208974_1000709 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13518
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (40.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13518

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (40.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F011473	Metagenome	290	Y
F011827	Metagenome	286	Y
F016246	Metagenome	248	Y
F016922	Metagenome	243	Y
F025916	Metagenome	199	Y
F026794	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100070910	F026794	GGA	MPDFHNSISDRDFNVTASQLRHAENDAREATRGEVTFDELDRRYADPISRDELTALLPFIIAFTERETVWAYELTERHGRPTPTWTPITEWDGHFRPECLSLEYRTDNPFATE
Ga0208974_100070912	F009945	GAG	MSAALATFKRENGIATHRKAGAGHRYPWMAFFATITMRDGTRRAFTELAHEYSMADLMRRNKVAEGEDEESACQFLAERNGILWPANPNPRVRAILQE
Ga0208974_100070920	F016246	N/A	MTQLDMFHDLPRRLTHEEILAGFAELLRAVEAMEFWEPWP
Ga0208974_100070922	F025916	N/A	MRGCRLRDCGAPDCPTCAGAEAARLYREQQACDHDEHDQGICLACGADITDELAGQAEDAADAAQDR
Ga0208974_100070923	F011827	N/A	MRNRTHSANTHLNYRSRWKERDAVSSKRHGETCDDIRLACHLWLLKRCPGYAEEHATLVDMAARNFTRA
Ga0208974_10007094	F011473	N/A	MNWKKYITDPLTNRPRRGAISRIAALLGTHYGCVRRMFDGIWTPTDEEAESLRAIVASRTNLAPKKRSDAGKKRGEYRKRAVAKSGVVPPQVKALRSAKNTAGK
Ga0208974_10007097	F016922	AGGAGG	VSAIRISSRAIQCVADAEGATEYAIRRNGRDFIVTAHSRLEADIAVEYYRAPEADESQPDLLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208974_1000709

Overview

Ecosystem & Geography

Associated Families

Sequences