NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000629

Scaffold Ga0208974_1000629


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000629 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14392
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011830Metagenome / Metatranscriptome286Y
F029433Metagenome188Y
F039481Metagenome163Y
F092026Metagenome107N
F093869Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100062914F092026GAGGMRVKIKVELNDGTPAVELTTNLFVVCEWERIENRKVADGKGIGYSDLCCWAYLMLQMRGDTLPDTWRKWVKANPTLEVSAVDETVGNPTESALTEGN
Ga0208974_100062916F029433GAGMDYEVTSNRLNGHNRGDIIKQANLGDLTTDLLFLVEAGHLSPIKPKKSAKPIDIDPQE
Ga0208974_100062918F011830AGTAGMTTYKTASKQLLSNYACISTLEPTEIVIGQSVTVGSLGAPFNGTFTVLALPQYLYVGVDGDTGEFLYNTEGAIPNQILFACTGDDVEFVKIFTGTVAYTQTCTWVTAAEILTYIGIATATADDTTFVTQCASAANIFCYRRRQECGYFDALTPAPSGDVKLATIMYGAALYRQRGGISDFASFDGMQQGSTNGLSPLVKQLLGVDRPQVA
Ga0208974_10006296F039481GAGMPIIIKSVIAFALFTIGFASNALLAPLPLEPDPPATALYGPAGSFIGQQKEIYLWIPPTTTTTVPQAVYKHGDCSWLPQMAVKAGWPIDQIGKLRQIALRESGCCPNRAGGDMVDKDCNITGVSEWSHRSDSGLLQINGVHWKQDHKEYAGVVCKQMQICTQAPLLDAYTNLRAGLLIYNLVKWQAWTK
Ga0208974_10006298F093869AGGMSARTDARLENEALHARLVFIVGVIMACTFAIMVVGLLFGMLFVNMPAELSPLDGSIVDLLSTISVFLTGALSGLVASNGIKKNAKVEAE
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