Scaffold Ga0208974_1000613

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000613
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14593
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F043291	Metagenome	156	N
F083939	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100061313	F083939	GGAG	MDADYIINSVKQTSETLYREGDTDQIAKLLYRIQMLEGHIRVLVNHIDNAKDEIKSLQLDLISKDSK
Ga0208974_100061315	F043291	GAGG	MRNLTYTTEVHSIDYGYLTVEYDYFESDDSVGLSETYDWFAYTVEAFESEPAGTEVTYELTAADQASIYAQIKKHHITMLEDFHA
Ga0208974_10006139	F002764	GAGG	LSPEDEAFEELSRRQGDWGLQGSRKHQILRYAETNARNEVIEEVAQHIEKCTLAFGKDTIQSFTVYIRGMKTK