Scaffold Ga0208974_1000566

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000566
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15124
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (65.38%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009526	Metagenome / Metatranscriptome	316	N
F031795	Metagenome	181	N
F036209	Metagenome / Metatranscriptome	170	Y
F038217	Metagenome	166	Y
F040620	Metagenome	161	N
F044983	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100056610	F031795	N/A	VIFAGVNEYADNTISNISISLGRRDIYEQALVGIANVSLWTDADTALNVNLSDSVEIQIKDTDDVYQTIYTGTISDIAIGLDAYGEIGSVARYNLTAVGPLAILNRFTTGVLGFAKEFDGTRVLNILSDAFLESWSEVVPTLTWSAVSSLATWDNWGGGNQTLVDNLIADIDTPGTYELTAYNDGPANALTLAQNAAQSGRGFLYEAPDGSIHYESYTSRASVTPLTLTDDDLLAVGLRQAAQWSEIVNDVTLTYKNNQEKYAADYTSQQSYGELSGTRSTQLENGTDAQSQADAFLESRAYARTYPEELTIPLHSPTVSDATRDALILMHVGSAVYTQDLPAVFGTVFDGFVEGIKWNLDRYTATMTLICSATSETYPSPIWLQIAPTVTWAGYTPSTTEWQDL
Ga0208974_100056622	F044983	GGA	MSDEVWASIERKIHGHYLAAQNLPASCPQCAKILEPVDFGVDPDSNERLWVTHCCGNWDKYLEKLGPADLI
Ga0208974_100056623	F040620	N/A	MTRWVQVKHDELLEYVAMVEYLRKDHTQLQEQIKDAKELASIIEATYKARLDKLTDYILDIHPSNYKYERGLLDAYNIVSGHE
Ga0208974_100056625	F038217	AGG	MTNNKPEPPDDKPMNIYLSLNSALSVANWIAPTDVAAITLARRLAIALDTAFDMGELKDATSLAAKYIQVLQQLHLTVETRTAGKQGEENDGTNHVGNYLRLLETKDRKPKPKPAQRRASGGGTS
Ga0208974_10005666	F009526	AGG	MPATYITGRSLTLTINSVSYADQASTVTLEMENNQQVLEVLAGRAYKTVDKTATLNVELFLDDTSSAGIISALWDAALAAPDTALTFSFDVNGDTFAGKVFPVFPTVGGAATDVLTTSLSFVVEDGAVTRT
Ga0208974_10005667	F009265	AGG	MQYTVTTKQGNNYIVSDENAWLWIEIERELGYTVSQAAEKMSQGSLDVITCMLYKAAKAQGHTKLPNQQAWVTNEFETFEVVEDSPKENSLTDSSE
Ga0208974_10005668	F036209	GAG	MDMAEKVTVKMTPDSRDLRSLYKAFREMDEGAKKALRDDVTSISQWSATEMQSSYNLNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFENGGRRFPDRSPAQGRGNEGYGIFITLKRIQPELTRRWKDAVNRRVIEKWSDNG