Scaffold Ga0208974_1000477

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000477
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16511
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (53.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015082	Metagenome / Metatranscriptome	257	Y
F021761	Metagenome / Metatranscriptome	217	Y
F041026	Metagenome / Metatranscriptome	160	Y
F057371	Metagenome / Metatranscriptome	136	Y
F094945	Metagenome / Metatranscriptome	105	N
F106141	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100047711	F094945	GGA	MKPAIERGEKCYNARLTEEQVRLARIYVMKGPVGVLPQLARKWGVGTQTLRNAVIYKNWKHIPAPTAEEIAATPLPSWVETVGRETQRAHCGRCVHWDHSRGCTMGIPESGNGGFFAASCAAYAVTSLAD
Ga0208974_100047715	F106141	GAGG	MTETRAVFFQKDNERIVIWTNHTRWTVTDMAAGGTKQYTKQLAMALSASLMAEGYEATVH
Ga0208974_100047720	F015082	N/A	MSESDIYWTFVTASKYAGSFYQAMGNAGLAADPNNKRRIIDAFPEMVATYGAASRLHQTMRAGVAA
Ga0208974_100047721	F021761	AGG	MISNPWVNRITALVTLLAIYAAGYAGGRDQAVQAHHQHPACNTNLKP
Ga0208974_100047728	F057371	N/A	MQEIKVRFEPADLTALDHQAAAAGTSRSAFIRNKALSLPVARLNTVEYHALVADAVSAMRGDLPRLQVEYLVAYVITRLDQHSRQAVASHQPTA
Ga0208974_10004776	F041026	N/A	MINIFRTIALELGRTLLKLAVDRALRKELPAIFAKLDIELPSMLVDHAQPLAVQAVVTDAIEEKLGHIATATQVSAVLGLYDPIKAALRNIKR