Scaffold Ga0208974_1000464

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000464
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16754
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.12%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F006181	Metagenome / Metatranscriptome	379	Y
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F019614	Metagenome / Metatranscriptome	228	N
F038202	Metagenome / Metatranscriptome	166	N
F040100	Metagenome / Metatranscriptome	162	N
F055719	Metagenome / Metatranscriptome	138	N
F096908	Metagenome / Metatranscriptome	104	N
F103118	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100046413	F019614	N/A	MNVASIASNKIKVEYSAMPGDNREFLTFSVPNGWDDVKKLTNRVLTYNNKDFTFSGWNSDRNECYFVRLVNGPSFVASIR
Ga0208974_100046414	F006181	N/A	MTTDMSTVDILERVFAEWNHGSGMECEMFVNSKKRSLCVNDIVCVNGTYFQCASVGWYEVSPEYVNALEKEVSDHPSRLDGAWFALSEVMWGRKCVVETV
Ga0208974_100046416	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIKKENGVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTIAQAEERFEQLVIKAKDSAEAKEEAAKTGVRNRGRRGTSKKIKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGSIKVNGTVKGEGKGRPATEYIVV
Ga0208974_100046417	F015582	N/A	MPDIDPELQAEQLEDAKYLEELNHYVNTLSAPSAESVALYRAKLSMLEDIHTEIRAKYPGFMPVYDALSDPEYNQSLGKYQETTYSFSSRDLRSSSNS
Ga0208974_100046419	F096908	N/A	MKNIKKYNERITKNNERITKNWNDYCDELEDYCRRRQTKNRIDAIRKTIKYVKTGEADKELALLLNPKGFRKSC
Ga0208974_100046420	F055719	N/A	MNKMLQKIVTKWKYTESDVDGQSVYHNKANANKMLQQIVTKWTGSNKTNKIKKKG
Ga0208974_100046423	F038202	N/A	MKVKVTDIVYDTRDICDGHQWDQNELDLPSEMIVEVDGIIDVESEIADAISDRTGWCVQGYNYEIL
Ga0208974_100046428	F040100	N/A	MNTDFTVLFKTITESVPHYLMFMGLVFLAYSLTIATIKVISDNVVKVVLAARAPVAFKIKDGSDDENT
Ga0208974_10004645	F103118	N/A	MHNTVLMILSVRNSKSFEQSVNKLQCEKIWFKGYREHELAPIINDFIKNSNFENYFITPDDLIIKPYQFDQLKNALHYHDIVSGWGVIRQNCTHTTITKPHNFLQQNIFKHQFTTHYLKNQQYNFSYKTHEINSLPNQIETAFTGWFYTGMKKHIWTQYPYECLNPPFASSDLMFSRRVLFDNKYKQICIKSANVIHLSNSNTMSTDTSFFDMSTCFSNKSILKTF
Ga0208974_10004648	F005293	N/A	MNVDSVPFVPTRDDLIGFISDTYKEINGFRPRPNWSELTYNQLDQWGQRLSAEVVTYRKQEVVRNRIARGLRRAEQRAWVEKKRGYFTPATFTLGNVVNF