NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000454

Scaffold Ga0208974_1000454


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000454 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16939
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (88.37%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003065Metagenome509Y
F039525Metagenome163Y
F042295Metagenome158Y
F063386Metagenome129N
F073237Metagenome120Y
F082375Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100045416F073237GGAGMNLQDVLWFDTSKGRIGILMVLDWHTEQLHYYLGIADGMNTNIDINHIYNGGVKLPDNVGMAFFFGGSE
Ga0208974_100045422F042295GAGGMSYQTAKRKYHDSSETEGHDGPNSHNCFANGCPMAGGISTGGNWVCAYHHQATSDTWPRVTEALRDCENVRLAINEVMKIDMISWGASVNGYPPKWQEFAALFDNEPELQPNEHEKIRKTKYEYRLRNELAIRAGLAKRKV
Ga0208974_100045436F039525N/AMSETKMSDYIKGFNAGVDCVLNEIERLEKIAPINLKQLIKHLDPQRDQKTAQKPDKGAP
Ga0208974_10004544F063386N/AMILMKIDDNGKLEADWDAIEKLTKCFDKGCKSEEAYKAKLFSLVLEHGYDVAMDDVEQDRKQVLFMLCTPAGNA
Ga0208974_100045442F003065AGGAMSEAELNIWEKALGWRKRQMIQRQLDPISNKIRNDALEEVAKEVENFKAFEKDTMGSFAAYIRSMKR
Ga0208974_10004545F082375GAGMTPKDFVTELFGEGWKPAQLTSFLDAIKGWSEDSQRYYAVRDFAKKLEWRIDPRDREECHKFDDLVDSKRFEHDLDEN
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