Scaffold Ga0208974_1000326

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000326
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20981
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (18.18%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F004451	Metagenome / Metatranscriptome	437	N
F008546	Metagenome / Metatranscriptome	331	Y
F009004	Metagenome / Metatranscriptome	324	Y
F015420	Metagenome / Metatranscriptome	255	Y
F029102	Metagenome / Metatranscriptome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100032610	F015420	N/A	MKRLIKYLTPVGAEQIAFAKALMVVVTAVISIVFLFPLLNLLS
Ga0208974_100032611	F004234	N/A	MNFINLFKRDNTYFSNWTTDYDSDVYIAGTIEPFTYDATETDDGDMSLFILDEVELNLLKSKL
Ga0208974_100032612	F003327	N/A	MTEFTQLAIKVQDEIANGDYTHQKYLQFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNNDNEEI
Ga0208974_100032613	F003299	N/A	MKRYKVVYKTFDYWNGPVKLVTRIVEAYDADHVKQLIQKNDDLIMLIEEV
Ga0208974_100032616	F008546	N/A	MKKTAVEWWKLLIVFVSAIVLEANSIAGFRFLMDEQWMGMVMMVAINPFLCLPMNHYTIEVKTFKQRALIALAFSLGFAVGVMTIRPFFI
Ga0208974_100032625	F004451	AGGA	MRPILDQYIAAHYKEIRKYTNYFLVRMKSTISADAVINNSFIYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTDLWDKIREDMQYQNNMAVIETYRGRITDRIKLIVFQCYFDKGYSTARAMAEYFRIPVTSAHYWIQEIKTDLKQLRDEN
Ga0208974_10003264	F029102	N/A	MKHSGILSFLTFGFGYLSGISLVFADQLHFKLLGCLLISYLTFLLASEIESKE
Ga0208974_10003267	F001808	N/A	MRYLAIILLLSSCSAQYHLNKAIKKGYTCEQTGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYKTTYVPRTRYQERLAYKLKVKTIYKDRIVQKAQAKATRPRANGNLSLLFVGVGIGLLLSYLFKFARDKYLW
Ga0208974_10003269	F009004	N/A	MKTFNEILDYLEVQQQEDKLTTNQLHLIIQTLTTFLNKEQLQEIENLFNQFKK