Scaffold Ga0208974_1000229

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000229
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24281
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (44.12%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F014249	Metagenome / Metatranscriptome	264	Y
F018136	Metagenome / Metatranscriptome	236	N
F020694	Metagenome / Metatranscriptome	222	N
F023103	Metagenome	211	N
F058998	Metagenome / Metatranscriptome	134	N
F073149	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100022912	F073149	GAG	MPNYYNRTNPSDLRDLAQSLIDTWEETNNPKLQEWIAAPPKPAPNAIWDNGQWVIPPPPSWTAEEWLNKEGYNSTGLVTLLDLSGQLISAGKSSPKLTAVKGWTDGMIAAYAADQAPRSDWTNAPFGFTETTQEAIAILNS
Ga0208974_100022922	F020694	N/A	MNELPLAVTFGERNFLANRTTYRRDNSLTDGGFMDSASMTITAIYDAFVQTISLGDVLVIGGRRFRVTSAELSQDAVSVDFTLEDINK
Ga0208974_100022925	F018136	N/A	MITDATYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMTMENLWSQVLCVSHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSSNERHFERSVTITVHAALFAS
Ga0208974_100022927	F011222	N/A	MAPRLKGAAFLYMDCNKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENDKGQDASQVYRQMTKEGDELEAKEPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISEHASDKTKQEMTRFLK
Ga0208974_100022928	F009267	N/A	MKKTQNTDLVKDDEILRIQAMEDGPKKVNGRTLRPITALTISWMQRNEIFSGNMDLVWKAAAFAFLHSEPTSSIRSVVNDRDTFVNAVDSWIEKNMAHHLEVGSMSDAMNSAFELYNASATESKAGSGSPN
Ga0208974_100022929	F023103	AGAAG	MAKFKFESVKFEQIMKDYAEIREVTIPDAVMLNARLLCVELGRRTQPFGNDETAGTIRVKNDIGKIIKPPVQLLAMANKVENKKIGQRLKSLIMNQRYDVVETIFRNLGFLNKWTGLEFLDSKSGIKTHHQDARIKPTGRTKTKGSKLFISSGSELNTYITEIQKRVGISKGGWADCASQLKKVNKGGLLTGFPSWVKKAVRSGSGSVQDSTSNIKSPKVTLTNNVPWVSQILPASEQLNALSVVSTKMRNQMNMILKKRQKTLTET
Ga0208974_10002293	F058998	GGAG	MSRQTKEHPKPEHDLQGKIREAEFKNILQKLKDGKTLTARESKIASEFAAQRDGKNKPLTQQEVARAWGMTQPNVHKMVKAGMPLTSIEAAEEWRKEWLKTHGRGDTAPESIQEAKLRKTLLECEKIEFSLSVDRDEYVKRTEIREAGIRIGAIFSAKLAALVNDASGALAGLDEASLRKKLHERTQAILAEIRNELEKV
Ga0208974_10002297	F014249	AGGA	MAMNKSFFGLPLATLQELQGDFTACLKAIAVAGASYSIAGRSFTRANLAEVAQTIKELQAAIDNASGSRIRKFTPTFPTQRP