NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000205

Scaffold Ga0208974_1000205


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000205 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25931
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (82.69%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004547Metagenome433Y
F006019Metagenome / Metatranscriptome383Y
F012116Metagenome283Y
F016267Metagenome248Y
F024784Metagenome204Y
F060718Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100020510F060718N/AMIVLNILNWIGLTILKLLIVALLFSAMGFSIIFMYAMQYLTQALHYVDKNVN
Ga0208974_100020521F024784GAGMDRILKVIDWIVWGLIVGSIGWFFYGCYQLINLFFMKG
Ga0208974_100020525F012116N/AMKPIAFLVEEFDTTGQLVWSALMTSQPTALEISKDIKNKLHNWTITPLIPDTKNIIKVNNIKKYNSKLLTEAYGGN
Ga0208974_10002055F016267AGGAMSTERELAEHGIEIKHIQTDVDTLMEDMSELKKRLDAIESALNEIKGGWKVFIFIAGLASAVVSWAVNHWLGK
Ga0208974_10002056F004547AGGAMKQLLMAITLLLLWVFLYDYAEGKALVKEMSMATEAGEIVLTTEECIFKKQGLQGYEYAAYATDRGHPNHEGCWKSDSYEGKHAVYIYFPEINQTAVFDAKLFKPKATI
Ga0208974_10002057F006019N/AMTFITENNIANLYSALIEFPVFEEYRLPPSSKVEFVIVHDDTICGQYEPPEQGEPHIITISTARHTHLYPVLMTLAHEIIHMCVYLESPKTDKYTSHKGLFLKLQKRVANHLGFDPKEL
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